PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 685aa    MW: 74723 Da    PI: 5.339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238247.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12508553454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  XP_008238247.1 508 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 553
                     799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-5482263IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39504553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-18505576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-15507558No hitNo description
PfamPF000104.3E-10508553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-18508574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-17510559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MTDYRIPPTM NLWTDDNASL MEAFMSSSDL TSFWAAPSAQ PTPQPAHPQA QPQSSASTSD  60
YPKAAAVAPS QPSITPFNQE TLMQRLQALI EGARESWTYA IFWQSSYDYS GGTVLGWGEG  120
FYKDERDKGK AKAKTTTSAA DQEYRKKVLR ELNSLISGAD TSADDAVVDQ EVTDTEWFFL  180
VSMTQSFVPG GGLPGQAFFH STPVWVAGPD RLAASPCERA RQGQAFGLQT LVCVPTANGV  240
VELGSTELIY QSSDLTNKVR VLFNFNNLEV GSWPMSGGGA DQGENDPSSL WINDPSSTTI  300
EVKDPVNMTP VTSAPTSTST QPVSKPIQFE SHQPSSSSLS ENPSAIQLQQ SQQQVQQQTQ  360
SFFTRELNFS DYGYDGSSVK NSNSNSLKPE SGEILSFGES KRSSYSANGK LFSGHSQIAA  420
AEDNNSKKKR SPPSRGSNDE GILSFSSGVI LPSSGVVKSG GGGAADSDHS DLEASVVRET  480
DSSRVVDPEK RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNVSKMDKA  540
SLLGDAISYI NELKAKLQTV ESDKEDLQKQ LESMNQDLGC KDSSSLSDQD LKMSKHQASS  600
KLIDLDIDVK IIGWDAMIRI QCCKKNHPAA RLMASLKELD LDVHHASISV VNDLMIQQAT  660
VKMGSRIYTQ DQLRLALSSK IGDSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-71772664195Transcription factor MYC3
4rqw_B2e-71772664195Transcription factor MYC3
4rs9_A2e-71772664195Transcription factor MYC3
4yz6_A2e-71772664195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489497KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894180.0KP689418.1 Prunus pseudocerasus isolate Unigene17979 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238247.10.0PREDICTED: transcription factor MYC2
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0U2RX640.0A0A0U2RX64_9R
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein